Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs369652 | chr8:17772904 | C/G | 2.79E-5 | 407 | 8.03 | 20.23 | 14.8 | KM Plot |
| LGG | rs370488227 | chr3:100926204 | CAAAGA/C | 2.28E-7 | 407 | 15.63 | 14.98 | 10.07 | KM Plot |
| LGG | rs371264810 | chr2:228075587 | T/C | 0 | 406 | 15.72 | 14.43 | 1.23 | KM Plot |
| LGG | rs3730327 | chr6:36027142 | A/G | 1.07E-9 | 406 | 15.63 | 15.13 | 6.15 | KM Plot |
| LGG | rs3730366 | chr6:36044225 | A/G | 1.02E-9 | 405 | 15.67 | 15.13 | 6.15 | KM Plot |
| LGG | rs3731213 | chr9:21986218 | C/T | 2.22E-16 | 407 | 15.78 | 11.57 | 0 | KM Plot |
| LGG | rs3731232 | chr9:21978443 | C/G | 7.88E-11 | 407 | 0 | 12.4 | 15.72 | KM Plot |
| LGG | rs373247497 | chr12:102265147 | AGCCACCATGCCCT/A | 3.93E-6 | 402 | 14.43 | 20.33 | 5.4 | KM Plot |
| LGG | rs3740341 | chr10:88426042 | A/G | 0.000182 | 407 | 8.97 | 12.6 | 16.23 | KM Plot |
| LGG | rs3741499 | chr12:56474379 | T/C | 8.26E-5 | 395 | 11.63 | 15.3 | 16.47 | KM Plot |
| LGG | rs3747514 | chr2:17935038 | T/C | 1.43E-8 | 405 | 15.2 | 15.97 | 7.33 | KM Plot |
| LGG | rs3750770 | chr10:71859953 | A/G | 5.86E-5 | 407 | 8.78 | 13.23 | 15.73 | KM Plot |
| LGG | rs375318626 | chr9:94142213 | T/A | 1.43E-5 | 400 | 14.9 | 21.63 | 8 | KM Plot |
| LGG | rs3753962 | chr1:201119328 | T/A | 5.92E-5 | 403 | 9.28 | 15.63 | 15.25 | KM Plot |
| LGG | rs3759392 | chr12:120932113 | G/T | 0.000115 | 402 | 15.37 | 13.05 | 20.23 | KM Plot |